PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca49465.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 756aa    MW: 87114.9 Da    PI: 7.8097
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca49465.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR145.42.6e-1479174191
        FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                 ++Y+++++ +GFs+rk + ++     + it+r f Cs++g++   +++     + ++++   tr +Cka ++   ++ g wev +   eHnH+l+p
  Dca49465.1  79 EMYQKHSQVMGFSTRKGTIRRVsGVGTPITQRYFLCSCQGEHGGGSRRglkgVSVQQKNALITRSECKAWIRTLVNEAGLWEVVDHIIEHNHPLTP 174
                 58****************999845677799***********99988888888788889999********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-1279174IPR004330FAR1 DNA binding domain
PfamPF105516.0E-29296390IPR018289MULE transposase domain
PROSITE profilePS509669.483565613IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 756 aa     Download sequence    Send to blast
MSNNKTKKPC TITFEIENII DLEKDASEED VFKGGGEDNP VDKEHDEGGV DDNLSDMKDF  60
DFSRSLVGVK AKSSEDLYEM YQKHSQVMGF STRKGTIRRV SGVGTPITQR YFLCSCQGEH  120
GGGSRRGLKG VSVQQKNALI TRSECKAWIR TLVNEAGLWE VVDHIIEHNH PLTPPQWQHH  180
HRSERRISEA EGEVIKAMTE TLVAPSVQFR VASAVAGGDT LVGHTKRDHI NFVNRLKMRS  240
IEGGDATTLI NLMNSRQAED PGFFFRVQFD EDGRLCNLFW RDSMMKEDYL LYHDFVIFDT  300
TYRTNRYNLI CGAFVGINNH WSNVMFGCSF LSDEKAESFE WLFNVFNESM GEDVRLVSIF  360
TVHDQAMSNA IEKVFPASRH RLCQWHIQQN AISHFGSLKH DRAFQKRFNK CLNGCYNKTE  420
FEETWSNMIK VYNLHDHSWF KRLYNIKTKW CTALNNEYFS AGILSSQRSE STNHAMGFQA  480
TKTTSVTEFF RIFELTVARW RSEEERKEFN GIRSTPTSVF PLVDLLQHAS EVYTLDLFRV  540
FDKEFTLAMG TRTIILPSSD SIFVYRVDLP TVEDRPHHVT FDCGNKLVEC TCRKFQVMGM  600
LCYHIIRFLH IHSIPQIPPI YILTRWSKSS KIGVWNRLLP FDMRTTDANN AINWCRSMLI  660
NLNNLLTKCQ DVPEARTALQ KIYGKANDEM QSILVTHNMD NDQLAGQVQD STILDPVRCT  720
TKGRRKSNAS KRKKARKSIE DTPNNVEMYT PFPRLI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721733KGRRKSNASKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-91FAR1-related sequence 5